Category Archives: MSI

More MSI Fun: Experimenting with iron gall ink

Submitted on behalf of Erin Hammeke

For conservators, one of the aspects of having the MSI system that excites us most is being able to visualize and document the effects of the treatments that we perform. Although we are still learning the ropes with our new system, we had a recent opportunity to image some iron gall ink documents. Iron gall ink is common historic ink that reacts with moisture in the environment to form acidic complexes that spread and sink into the paper, weakening the paper and, in some cases, leaving holes and losses. This iron gall ink degradation can be better visualized with MSI, since the beginning stage, haloing, is not always visible under normal illumination. Look here for more information on iron gall ink damage and here for using MSI to document iron gall ink condition and treatment. We also illustrated the haloing effect of iron gall ink damage using MSI on Jantz MS #124 in a previous post.

Recently, DUL conservators experimented with treating some discarded iron gall ink manuscripts with a chemical treatment that aims to arrest the ink’s degradation. This treatment requires submerging the manuscripts in a calcium phytate solution – a chemical that bonds with free iron (II) ions, stabilizing the ink and preventing it from corroding further. The document is then rinsed in a water bath and an alkaline reserve is applied. Resizing with gelatin is another common step, but we did resize our test manuscripts.

Since these were discarded test material, we were able to cut the manuscripts in two and only treat one half. Imaging the manuscript with MSI revealed some notable findings.

Most of the treated papers now appear lighter and brighter under normal illumination because they have been washed. However, the untreated halves exhibited pronounced UV induced visible fluorescence around the 488 nm range and the treated halves did not. We believe this difference likely has to do with washing the paper substrate and rinsing out degradation products or perhaps paper size that may exhibit fluorescence at this wavelength. We were happy to see that for a treatment that targets the ink, there was very little noticeable difference in the appearance of the inks between untreated and treated portions of the test manuscript. There was some reduction in the “ink sink” (ink visible from the opposite side of the manuscript) and a very slight softness to the edges of the ink in the treated sample, but these changes were very minimal. We look forward to imaging more of our test manuscripts in the future and seeing what else we can learn from them.

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Infrastructure and Multispectral Imaging in the Library

As we continue to work on our “standard” full color digitization projects such as Section A and the William Gedney Photograph Collection, both of which are multiyear projects, we are still hard at work with a variety of things related to Multispectral Imaging (MSI).  We have been writing documentation and posting it to our Knowledgebase, building tools to track MSI requests and establishing a dedicated storage space for MSI image stacks.  Below are some high-level details about these things and the kinks we are ironing out of the MSI process.  As with any new venture, it can be messy in the beginning and tedious to put all the details in order but in the end it’s worth it.

MSI Knowledge Base

We established a knowledge base for documents related to MSI that cover a wide variety of subjects:  How-To articles, to do lists, templates, notes taken during imaging sessions, technical support issues and more.  These documents will help us develop sound guidelines and workflows which in turn will make our work in this area more consistent, efficient and productive.

Dedicated storage space

Working with other IT staff, a new server space has been established specifically for MSI.  This is such a relief because, as we began testing the system in the early days, we didn’t have a dedicated space for storing the MSI image stacks and most of our established spaces were permissions restricted, preventing our large MSI group from using it.  On top of this we didn’t have any file management strategies in place for MSI.  This made for some messy file management. From our first demo, initial testing and eventual purchase of the system, we used a variety of storage spaces and a number of folder structures as we learned the system.  We used our shared Library server, the Digital Production Center’s production server, Box and Google Drive.  Files were all over the place!  What a mess!  In our new dedicated space, we have established standard folder structures and file management strategies and store all of our MSI image stacks in one place now.  Whew!

The Request Queue

In the beginning, once the MSI system was up and running, our group had a brainstorming session to identify a variety of material that we could use to test with and hone our skills in using the new system.  Initially this queue was a bulleted list in Basecamp identifying an item.  As we worked through the list it would sometimes be confusing as to what had already been done and what item was next.  This process became more cumbersome because multiple people were working through the list at the same time, both on capture and processing, with no specific reporting mechanism to track who was doing what.  We have recently built an MSI Request Queue that tracks items to be captured in a more straightforward, clear manner.  We have included title, barcode and item information along with the research question to be answered, it priority level, due date, requester information and internal contact information.  The MSI group will use this queue for a few weeks then tweak it as necessary.  No more confusion.

The Processing Queue

As described in a previous post, capturing with MSI produces lots of image stacks that contain lots of files.  On average, capturing one page can produce 6 image stacks totaling 364 images.  There are 6 different stages of conversion/processing that the image stack goes through before it might be considered “done”, and the fact that everyone on the MSI team has other job responsibilities makes it difficult to carve out a large enough block of time to convert and process the image stacks through all of the stages.  This made it difficult to know what items had been completely processed or not.  We have recently built an MSI Processing Queue that tracks what stage of processing each item is in.  We have included root file names, flat field information, PPI and a column for each phase of processing to indicate whether or not an image stack has passed through a phase.  As with the Request Queue, the MSI group will use this queue for a few weeks then tweak it as necessary.  No more confusion.

Duke University East Campus Progress Picture #27

As with most blog posts, the progress described above has been boiled down and simplified as to not bore you to death, but this is a fair amount of work nonetheless.  Having dedicated storage and a standardized folder structure simplifies the management of lots of files and puts them in a predictable structure.  Streamlining the Request Queue establishes a clear path of work and provides enough information about the request in order to move forward with a clear goal in mind.  Developing a Processing Queue that provides a snapshot of the state of processing across multiple requests and provides enough information so that any staff member familiar with our MSI process can complete a request.  Establishing a knowledge base to document our workflows and guidelines ties everything together in an organized and searchable manner making it easier to find information about established procedures and troubleshoot technical problems.

It is important to put this infrastructure in place and build a strong foundation for Multispectral Imaging at the Library so it will scale in the future.  This is only the beginning!

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Want to learn even more about MSI at DUL?

 

 

Multispectral Imaging: What’s it good for?

At the beginning of March, the multispectral imaging working group presented details about the imaging system and the group’s progress so far to other library staff at a First Wednesday event. Representatives from Conservation Services, Data and Visualization Services, the Digital Production Center, the Duke Collaboratory for Classics Computing (DC3) and the Rubenstein Library each shared their involvement and interest in the imaging technology. Our presentation attempted to answer some basic questions about how the equipment works and how it can be used to benefit the scholarly community. You can view a video of that presentation here

Some of the images we have already shared illustrate a basic benefit or goal of spectral imaging for books and manuscripts: making obscured text visible. But what else can this technology tell us about the objects in our collections? As a library conservator, I am very interested in the ways that this technology can provide more information about the composition and condition of objects, as well as inform conservation treatment decisions and document their efficacy.

Conservators and conservation scientists have been using spectral imaging to help distinguish between and to characterize materials for some time. For example, pigments, adhesives, or coatings may appear very differently under ultraviolet or infrared radiation. Many labs have the equipment to image under a few wavelengths of light, but our new imaging system allows us to capture at a much broader range of wavelengths and compare them in an image stack.

Adhesive samples under visible and UV light.
(Photo credit Art Conservation Department, SUNY Buffalo State)

Spectral imaging  can help to identify the materials used to make or repair an object by the way they react under different light sources. Correct identification of components is important in making the best conservation treatment decisions and might also be used to establish the relative age of a particular object or to verify its authenticity.  While spectral imaging offers the promise of providing a non-destructive tool for identification, it does have limitations and other analytical techniques may be required.

Pigment and dye-based inks under visible and infrared light.
(Photo credit Image Permanence Institute)

Multispectral imaging offers new opportunities to evaluate and document the condition of objects within our collections. Previous repairs may be so well executed or intentionally obscured that the location or extent of the repair is not obvious under visible light. Areas of paper or parchment that have been replaced or have added reinforcements (such as linings) may appear different from the original when viewed under UV radiation. Spectral imaging can provide better visual documentation of the degradation of inks ( see image below) or damage from mold or water that is not apparent under visible light.

Iron gall ink degredation. Jantz MS#124, Rubenstein Library
(Jantz MS#124, Rubenstein Library)

This imaging equipment provides opportunities for better measuring the effectiveness of the treatments that conservators perform in-house. For example, a common treatment that we perform in our lab is the removal of pressure sensitive tape repairs from paper documents using solvents. Spectral imaging before, during, and after treatment could document the effectiveness of the solvents or other employed techniques in removing the tape carrier and adhesive from the paper.

Tape removal before and during treatment under visible and UV light.
(Photo credit Art Conservation Department, SUNY Buffalo State)

Staff from the Conservation Services department have a long history of participating in the library’s digitization program in order to ensure the safety of fragile collection materials. Our department will continue to serve in this capacity for special collections objects undergoing multispectral imaging to answer specific research questions; however, we are also excited to employ this same technology to better care for the cultural heritage within our collections.

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Multispectral Imaging Through Collaboration

I am sure you have all been following the Library’s exploration into Multispectral Imaging (MSI) here on Bitstreams, Preservation Underground and the News & Observer.  Previous posts have detailed our collaboration with R.B. Toth Associates and the Duke Eye Center, the basic process and equipment, and the wide range of departments that could benefit from MSI.  In early December of last year (that sounds like it was so long ago!), we finished readying the room for MSI capture, installed the equipment, and went to MSI boot camp.

Obligatory before and after shot. In the bottom image, the new MSI system is in the background on the left with the full spectrum system that we have been using for years on the right. Other additions to the room are blackout curtains, neutral gray walls and black ceiling tiles all to control light spill between the two camera systems. Full spectrum overhead lighting and a new tile floor were installed which is standard for an imaging lab in the Library.

Well, boot camp came to us. Meghan Wilson, an independent contractor who has worked with R.B. Toth Associates for many years, started our training with an overview of the equipment and the basic science behind it. She covered the different lighting schemes and when they should be used.  She explained MSI applications for identifying resins, adhesives and pigments and how to use UV lighting and filters to expose obscured text.   We quickly went from talking to doing.  As with any training session worth its salt, things went awry right off the bat (not Meghan’s fault).  We had powered up the equipment but the camera would not communicate with the software and the lights would not fire when the shutter was triggered.  This was actually a good experience because we had to troubleshoot on the spot and figure out what was going on together as a team.  It turns out that there are six different pieces of equipment that have to be powered-up in a specific sequence in order for the system to communicate properly (tee up Apollo 13 soundtrack). Once we got the system up and running we took turns driving the software and hardware to capture a number of items that we had pre-selected.  This is an involved process that produces a bunch of files that eventually produce an image stack that can be manipulated using specialized software.  When it’s all said and done, files have been converted, cleaned, flattened, manipulated and variations produced that are somewhere in the neighborhood of 300 files. Whoa!

This is not your parents’ point and shoot—not the room, the lights, the curtains, the hardware, the software, the pricetag, none of it. But it is different in another more important way too. This process is team-driven and interdisciplinary. Our R&D working group is diverse and includes representatives from the following library departments.

  • The Digital Production Center (DPC) has expertise in high-end, full spectrum imaging for cultural heritage institutions along with a deep knowledge of the camera and lighting systems involved in MSI, file storage, naming and management of large sets of files with complex relationships.
  • The Duke Collaboratory for Classics Computing (DC3) offers a scholarly and research perspective on papyri, manuscripts, etc., as well as  experience with MSI and other imaging modalities
  • The Conservation Lab brings expertise in the Libraries’ collections and a deep understanding of the materiality and history of the objects we are imaging.
  • Duke Libraries’ Data Visualization Services (DVS) has expertise in the processing and display of complex data.
  • The Rubenstein Library’s Collection Development brings a deep understanding of the collections, provenance and history of materials, and valuable contacts with researchers near and far.

To get the most out of MSI we need all of those skills and perspectives. What MSI really offers is the ability to ask—and we hope answer—strings of good questions. Is there ink beneath that paste-down or paint? Is this a palimpsest? What text is obscured by that stain or fire-damage or water damage? Can we recover it without having to intervene physically? What does the ‘invisible’ text say and what if anything does this tell us about the object’s history? Is the reflectance signature of the ink compatible with the proposed date or provenance of the object? That’s just for starters. But you can see how even framing the right question requires a range of perspectives; we have to understand what kinds of properties MSI is likely to illuminate, what kinds of questions the material objects themselves suggest or demand, what the historical and scholarly stakes are, what the wider implications for our and others’ collections are, and how best to facilitate human interface with the data that we collect. No single person on the team commands all of this.

Working in any large group can be a challenge. But when it all comes together, it is worth it. Below is a page from Jantz 723, one processed as a black and white image and the other a Principal Component Analysis produced by the MSI capture and processed using ImageJ and a set of tools created by Bill Christens-Barry of R.B. Toth Associates with false color applied using Photoshop. Using MSI we were able to better reveal this watermark which had previously been obscured.

Jantz 723

I think we feel like 16-year-old kids with newly minted drivers’ licenses who have never driven a car on the highway or out of town. A whole new world has just opened up to us, and we are really excited and a little apprehensive!

What now?

Practice, experiment, document, refine. Over the next 12 (16? 18) months we will work together to hone our collective skills, driving the system, deepening our understanding of the scholarly, conservation, and curatorial use-cases for the technology, optimizing workflow, documenting best practices, getting a firm grip on scale, pace, and cost of what we can do. The team will assemble monthly, practice what we have learned, and lean on each other’s expertise to develop a solid workflow that includes the right expertise at the right time.  We will select a wide variety of materials so that we can develop a feel for how far we can push the system and what we can expect day to day. During all of this practice, workflows, guidelines, policies and expectations will come into sharper focus.

As you can tell from the above, we are going to learn a lot over the coming months.  We plan to share what we learn via regular posts here and elsewhere.  Although we are not prepared yet to offer MSI as a standard library service, we are interested to hear your suggestions for Duke Library collection items that may benefit from MSI imaging.  We have a long queue of items that we would like to shoot, and are excited to add more research questions, use cases, and new opportunities to push our skills forward.   To suggest materials, contact Molly Bragg, Digital Collections Program Manager (molly.bragg at Duke.edu), Joshua Sosin, Associate Professor in Classical Studies & History (jds15 at Duke.edu) or Curator of Collections (andrew.armacost at Duke.edu).

Want to learn even more about MSI at DUL?

Ducks, Stars, t’s and i’s: The path to MSI

Back in March I wrote a blog post about the Library exploring Multispectral Imaging (MSI) to see if it was feasible to bring this capability to the Library.  It seems that all the stars have aligned, all the ducks have been put in order, the t’s crossed and the i’s dotted because over the past few days/weeks we have been receiving shipments of MSI equipment, scheduling the painting of walls and installation of tile floors and finalizing equipment installation and training dates (thanks Molly!).  A lot of time and energy went into bringing MSI to the Library and I’m sure I speak for everyone involved along the way that WE ARE REALLY EXCITED!

I won’t get too technical but I feel like geeking out on this a little… like I said… I’m excited!

Lights, Cameras and Digital Backs: To maximize the usefulness of this equipment and the space it will consume we will capture both MSI and full color images with (mostly) the same equipment.  MSI and full color capture require different light sources, digital backs and software.   In order to capture full color images, we will be using the Atom Lighting and copy stand system and a Phase One IQ180 80MP digital back from Digital Transitions.  To capture  MSI we will be using narrowband multispectral EurekaLight panels with a Phase One IQ260 Achromatic, 60MP digital back.  These two setups will use the same camera body, lens and copy stand.  The hope is to set the equipment up in a way that we can “easily” switch between the two setups.

partners1

The computer that drives the system: Bill Christianson of R. B. Toth Associates has been working with Library IT to build a work station that will drive both the MSI and full color systems. We opted for a dual boot system because the Capture One software that drives the Phase One digital back for capturing full-color images has been more stable in a Mac environment and MSI capture requires software that only runs on a Windows system. Complicated, but I’m sure they will work out all the technical details. atom-transparent-hero-take2

The Equipment (Geek out):

  • Phase One IQ260 Achromatic, 60MP Digital Back
  • Phase One IQ180, 80MP Digital Back
  • Phase One iXR Camera Body
  • Phase One 120mm LS Lens
  • DT Atom Digitization Bench -Motorized Column (received)
  • DT Photon LED 20″ Light Banks (received)
  • Narrowband multispectral EurekaLight panels
  • Fluorescence filters and control
  • Workstation (in progress)
  • Software
  • Blackout curtains and track (received)

The space: We are moving our current Phase One system and the MSI system into the same room. While full-color capture is pretty straightforward in terms of environment (overhead lights off, continuous light source for exposing material, neutral wall color and no windows), the MSI environment requires total darkness during capture. In order to have both systems in the same room we will be using blackout curtains between the two systems so the MSI system will be able to capture in total darkness and the full-color system will be able to use a continuous light source. While the blackout curtains are a significant upgrade, the overall space needs some minor remodeling. We will be upgrading to full spectrum overhead lighting, gray walls and a tile floor to match the existing lab environment.

img_0548

As shown above… we have begun to receive MSI equipment, installation and training dates have been finalized, the work station is being built and configured as I write this and the room that will house both Phase One systems has been cleared out and is ready for a makeover…  It is actually happening!

What a team effort!

I look forward to future blog posts about the discoveries we will make using our new MSI system!

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Multispectral Imaging in the Library

MSI setup
Bill Christens-Barry and Mike Adamo test the MSI system

 

Over the past 6 months or so the Digital Production Center has been collaborating with Duke Collaboratory for Classics Computing (DC3) and the Conservation Services Department to investigate multispectral imaging capabilities for the Library. Multispectral imaging (MSI) is a mode of image capture that uses a series of narrow band lights of specific frequencies along with a series of filters to illuminate an object.  Highly tailored hardware and software are used in a controlled environment to capture artifacts with the goal of revealing information not seen by the human eye. This type of capture system in the Library would benefit many departments and researchers alike. Our primary focus for this collaboration are the needs of the Papyri community, Conservation Services along with additional capacity for the Digital Production Center.

Josh Sosin of DC3 was already in contact with Mike Toth of R. B. Toth Associates, a company that is at the leading edge of MSI for Cultural Heritage and research communities, on a joint effort between DC3, Conservation Services and the Duke Eye Center to use Optical Coherence Tomography (OCT) to hopefully reveal hidden layers of mummy masks made of papyri. The DPC has a long standing relationship with Digital Transitions, a reseller of the Phase One digital back, which happens to be the same digital back used in the Toth MSI system. And the Conservation lab was already involved in the OCT collaboration so it was only natural to invite R. B. Toth Associates to the Library to show us their MSI system.

After observing the OCT work done at the Eye Center we made our way to the Library to setup the MSI system. Bill Christens-Barry of R. B. Toth Associates walked me through some very high-level physics related to MSI, we setup the system and got ready to capture selected material which included Ashkar-Gilson manuscripts, various papyri and other material that might benefit from MSI. By the time we started capturing images we had a full house. Crammed into the room were members of DC3, DPC, Conservation, Digital Transitions and Toth Associates all of whom had a stake in this collaboration. After long hours of sitting in the dark (necessary for MSI image capture) we emerged from the room blurry eyed and full of hope that something previously unseen would be revealed.

Ashkar-Gilson
The text of this manuscript was revealed primarily with the IR narrowband light at 940 nm, which Bill enhanced.

The resulting captures are as ‘stack’ or ‘block’ of monochromatic images captured using different wavelengths of light and ultraviolet and infrared filters. Using software developed by Bill Christens-Barry to process and manipulate the images will reveal information if it is there by combining, removing or enhancing images in the stack. One of the first items we processed was Ashkar-GilsonMS14 Deuteronomy 4.2-4.23 seen below. This really blew us away.

This item went from nearly unreadable to almost entirely readable! Bill assured me that he had only done minimal processing and that he should be able to uncover more of the text in the darker areas with some fine tuning. The text of this manuscript was revealed primarily through the use of the IR filter and was not necessarily the direct product of exposing the manuscript to individual bands of light but the result is no less spectacular. Because the capture process is so time consuming and time was limited no other Ashkar-Gilson manuscript was digitized at this time.

We digitized the image on the left in 2010 and ever since then, when asked, ‘What is the most exciting thing you have digitized’ I often answer, “The Ashkar-Gilson manuscripts. Manuscripts from ca. 7th to 8th Century C.E. Some of them still have fur on the back and a number of them are unreadable… but you can feel the history.” Now my admiration for these manuscripts is renewed and maybe Josh can tell me what it says.

It is our hope that we can bring this technology to Duke University so we can explore our material in greater depth and reveal information that has not been seen for a very, very long time.

Beth Doyle, Head of Conservation Services, wrote a blog post for Preservation Underground about her experience with MSI. Check it out!

group
Mike Toth, Mike Adamo, Bill Christens-Barry, Beth Doyle, Josh Sosin and Michael Chan

Also, check out this article from the New & Observer.

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Want to learn even more about MSI at DUL?